MRIQC: individual T1w report

Summary

Subject ID: 038_ControlPre.
Date and time: 2018-05-06, 21:26.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.29425992252151156
cnr			4.365912104247069
efc			0.5926512059391219
fber			83.79759216308594
fwhm	avg		3.943436666666667
fwhm	x		3.76624
fwhm	y		4.11007
fwhm	z		3.954
icvs	csf		0.197610543258541
icvs	gm		0.46717488925568834
icvs	wm		0.33521456748577066
inu	med		1.0342280864715576
inu	range		0.331528055667877
qi	1		0.0
qi	2		0.0008057087585860973
rpve	csf		25.6758751174286
rpve	gm		12.18478331560585
rpve	wm		19.36726042662099
size	x		180
size	y		256
size	z		256
snr	csf		2.5163041545115914
snr	gm		10.255298509212974
snr	total		10.585668370949646
snr	wm		18.985402449124372
snrd	csf		12.600982619918584
snrd	gm		26.89710780835072
snrd	total		27.24784792863043
snrd	wm		42.24545335762199
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	2.3621845837034092
summary	bg	mad	15.508091926574707
summary	bg	mean	55.34019088745117
summary	bg	median	53.231571197509766
summary	bg	n	2564023.0
summary	bg	p05	32.10947113037109
summary	bg	p95	85.79493865966796
summary	bg	stdv	17.213497161865234
summary	csf	k	0.417305881864126
summary	csf	mad	122.99517822265625
summary	csf	mean	307.6134338378906
summary	csf	median	298.2847595214844
summary	csf	n	14217.0
summary	csf	p05	131.3671417236328
summary	csf	p95	509.5486511230468
summary	csf	stdv	118.53665161132812
summary	gm	k	0.0890790447602865
summary	gm	mad	60.81501770019531
summary	gm	mean	636.979248046875
summary	gm	median	636.6961669921875
summary	gm	n	35236.0
summary	gm	p05	535.7540893554688
summary	gm	p95	741.3836975097656
summary	gm	stdv	62.08372497558594
summary	wm	k	1.11772394660405
summary	wm	mad	46.09523010253906
summary	wm	mean	1001.23779296875
summary	wm	median	1000.0152587890625
summary	wm	n	174178.0
summary	wm	p05	916.1235229492188
summary	wm	p95	1088.7734008789062
summary	wm	stdv	52.672698974609375
tpm	overlap	csf	0.21659159660339355
tpm	overlap	gm	0.5356251001358032
tpm	overlap	wm	0.5432983636856079
wm2max			0.603416527796256

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	a0c91618cfaef707e130882637ddd9cc
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.