MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.29425992252151156
cnr4.365912104247069
efc0.5926512059391219
fber83.79759216308594
fwhmavg3.943436666666667
fwhmx3.76624
fwhmy4.11007
fwhmz3.954
icvscsf0.197610543258541
icvsgm0.46717488925568834
icvswm0.33521456748577066
inumed1.0342280864715576
inurange0.331528055667877
qi10.0
qi20.0008057087585860973
rpvecsf25.6758751174286
rpvegm12.18478331560585
rpvewm19.36726042662099
sizex180
sizey256
sizez256
snrcsf2.5163041545115914
snrgm10.255298509212974
snrtotal10.585668370949646
snrwm18.985402449124372
snrdcsf12.600982619918584
snrdgm26.89710780835072
snrdtotal27.24784792863043
snrdwm42.24545335762199
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk2.3621845837034092
summarybgmad15.508091926574707
summarybgmean55.34019088745117
summarybgmedian53.231571197509766
summarybgn2564023.0
summarybgp0532.10947113037109
summarybgp9585.79493865966796
summarybgstdv17.213497161865234
summarycsfk0.417305881864126
summarycsfmad122.99517822265625
summarycsfmean307.6134338378906
summarycsfmedian298.2847595214844
summarycsfn14217.0
summarycsfp05131.3671417236328
summarycsfp95509.5486511230468
summarycsfstdv118.53665161132812
summarygmk0.0890790447602865
summarygmmad60.81501770019531
summarygmmean636.979248046875
summarygmmedian636.6961669921875
summarygmn35236.0
summarygmp05535.7540893554688
summarygmp95741.3836975097656
summarygmstdv62.08372497558594
summarywmk1.11772394660405
summarywmmad46.09523010253906
summarywmmean1001.23779296875
summarywmmedian1000.0152587890625
summarywmn174178.0
summarywmp05916.1235229492188
summarywmp951088.7734008789062
summarywmstdv52.672698974609375
tpmoverlapcsf0.21659159660339355
tpmoverlapgm0.5356251001358032
tpmoverlapwm0.5432983636856079
wm2max0.603416527796256

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5suma0c91618cfaef707e130882637ddd9cc
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.